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International Journal Of Bilogical Sciences

.: Home > International Journal Of Bilogical Sciences > 2015 > Volume 11 Number 9 > Jin Zhou, Yao-Yang Zhang, Qing-Yun Li, Zhong-Hua Cai

Evolutionary History of Cathepsin L (L-like) Family Genes in Vertebrates

Jin Zhou, Yao-Yang Zhang, Qing-Yun Li, Zhong-Hua Cai
1. The Division of Ocean Science & Technology, Graduate School at Shenzhen, Tsinghua University, Shenzhen, 518055, P. R. China 2. Shenzhen Public Platform of Screening & Application of Marine Microbial Resources, Graduate School at Shenzhen, Tsinghua University, Shenzhen, 518055, P. R. China 3. Shenzhen Key Laboratory for Coastal Ocean Dynamic and Environment, Graduate School at Shenzhen, Tsinghua University, Shenzhen, 518055, P. R. China 4. School of Life Science, Tsinghua University, Beijing, 100084, P. R. China These two authors contributed equally to this work. Corresponding author: Zhong-Hua Cai, Room 304, L-Building, Graduate School at Shenzhen, Tsinghua University, Shenzhen University Town, Xili Town, Shenzhen City, Guangdong Province, P R. China. E-mail address: caizh@sz.tsinghua.edu.cn; Tel: +86 755 26036108; Fax: +86 755 26036108
Abstract :

Cathepsin L family, an important cysteine protease found in lysosomes, is categorized into cathepsins B, F, H, K, L, S, and W in vertebrates. This categorization is based on their sequence alignment and traditional functional classification, but the evolutionary relationship of family members is unclear. This study determined the evolutionary relationship of cathepsin L family genes in vertebrates through phylogenetic construction. Results showed that cathepsins F, H, S and K, and L and V were chronologically diverged. Tandem-repeat duplication was found to occur in the evolutionary history of cathepsin L family. Cathepsin L in zebrafish, cathepsins S and K in xenopus, and cathepsin L in mice and rats underwent evident tandem-repeat events. Positive selection was detected in cathepsin L-like members in mice and rats, and amino acid sites under positive selection pressure were calculated. Most of these sites appeared at the connection of secondary structures, suggesting that the sites may slightly change spatial structure. Severe positive selection was also observed in cathepsin V (L2) of primates, indicating that this enzyme had some special functions. Our work provided a brief evolutionary history of cathepsin L family and differentiated cathepsins S and K from cathepsin L based on vertebrate appearance. Positive selection was the specific cause of differentiation of cathepsin L family genes, confirming that gene function variation after expansion events was related to interactions with the environment and adaptability. 

Keywords :
cathespin L family gene; evolution; positive selection; functional divergence; environmental adaptability

Date Deposited : 02 Mar 2016 11:39

Last Modified : 02 Mar 2016 11:39

Official URL: http://www.ijbs.com/v11i9

Volume 11, Number 9, - 2015 , ISSN 1449-2288

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